species:   Artha
pid:       MI0001018
parent:    ath-MIR398b
paralog:   
locus:     5:4691022-4691137
matures:   ['UGUGUUCUCAGGUCACCCCUG', 'GGGUUGAUAUGAGAACACACG']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:4691022-4691137

0 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

          ***********************                                                  ***********************          
UGGAUCUCGACAGGGUUGAUAUGAGAACACACGAGUAAUCAACGGCUGUAAUGACGCUACGUCAUUGUUACAGCUCUCGUUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUU
.(((.((((.(((((.((((.((((((((((.(((.(((....(((((((((((((...))))))...)))))))...)))))).)))))))))).)))).))))).)))).))).
-------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=1 c
------------GGGUUGAUAUGAGAACACACG----------------------------------------------------------------------------------- l=21 a=0 c*
-------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=1 ma
------------GGGUUGAUAUGAGAACACACG----------------------------------------------------------------------------------- l=21 a=0 ma*

-----------AGGGUUGAUgUGAGAACACAC------------------------------------------------------------------------------------ l=21 a=1 
-----------AGGGUUGAUAUGAGAACACAC------------------------------------------------------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=1 (c,ma)

mb-01111
ax-1011011
ku-01
ss-110111111110
fn-011
